iCOMIC_doc¶
Documents¶
- iCOMIC User Guide v0.0.0
- 1. About
- 2. Installation
- 3. Getting started
- 4. Using iCOMIC for DNA-Seq or RNA-Seq analysis
- 5. Using iCOMIC for cTaG and NBDriver tools
- 6. Walkthrough of pre-constructed pipeline
- 7. Creating a custom pipeline
- 8. Viewing and analyzing results
- 9. Tutorials
- 9.1. What is it?
- 9.2. Prerequisites:
- 9.3. Conda Installation
- 9.4. Testing
- DNA-Seq
- RNA-Seq
- cTaG
- NBDriver
- 9.5. Analysis quick guide
- 9.5.1 Launching the wrapper
- 9.5.2 Running iCOMIC: A quick walkthrough
- 9.5.3 Adding samples: Method one
- 9.5.4 Adding samples: Method two
- 9.5.5 Adding samples: specifying DNA-seq workflow
- 9.5.6 Adding samples: specifying RNA-seq workflow
- 9.5.7 Review of Sample quality
- 9.5.8 Specifying analysis settings DNA seq
- 9.5.9 Setting up differential gene expression analysis
- 9.5.10 Submitting the analysis
- 9.5.11 Retrieving the data
- 9.5.12 Analysis with BAM input
- 9.5.13 Running cTaG
- 9.5.14 Running NBDriver
- 9.6 Retrieving logs
- 10. Troubleshooting runtime issues
- 11. Changelog
- 12. Glossary